Marsa FC withdrew from the competition.
Youth League Section C 2020/21
| Pos | Club | P | W | D | L | F | A | +/- | Pts |
|---|---|---|---|---|---|---|---|---|---|
| 1 |  Tarxien R. | 4 | 3 | 1 | 0 | 17 | 8 | 9 | 10 |
| 2 |  Marsaxlokk | 5 | 3 | 1 | 1 | 14 | 7 | 7 | 10 |
| 3 |  Mgarr U. | 5 | 2 | 1 | 2 | 7 | 7 | 0 | 7 |
| 3 |  Zejtun C. | 5 | 2 | 1 | 2 | 7 | 7 | 0 | 7 |
| 5 |  Mellieha | 4 | 2 | 1 | 1 | 4 | 5 | -1 | 7 |
| 6 |  Ghaxaq | 5 | 1 | 3 | 1 | 5 | 4 | 1 | 6 |
| 7 |  Fgura U. | 5 | 1 | 2 | 2 | 8 | 9 | -1 | 5 |
| 8 |  Msida SJ | 4 | 1 | 2 | 1 | 4 | 5 | -1 | 5 |
| 9 |  Sirens | 4 | 1 | 1 | 2 | 5 | 6 | -1 | 4 |
| 10 |  Kirkop U. | 5 | 1 | 1 | 3 | 6 | 9 | -3 | 4 |
| 11 |  St. George's | 4 | 0 | 2 | 2 | 4 | 14 | -10 | 2 |
| 12 |  Marsa | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
