Marsa FC withdrew from the competition.
Youth League Section C 2020/21
| Pos | Club | P | W | D | L | F | A | +/- | Pts |
|---|---|---|---|---|---|---|---|---|---|
| 1 |  Tarxien R. | 10 | 8 | 2 | 0 | 36 | 12 | 24 | 26 |
| 2 |  Marsaxlokk | 10 | 6 | 3 | 1 | 23 | 10 | 13 | 21 |
| 3 |  Ghaxaq | 10 | 5 | 4 | 1 | 22 | 4 | 18 | 19 |
| 4 |  Mgarr U. | 10 | 5 | 2 | 3 | 18 | 14 | 4 | 17 |
| 5 |  Zejtun C. | 10 | 4 | 1 | 5 | 13 | 17 | -4 | 13 |
| 6 |  Mellieha | 10 | 4 | 1 | 5 | 10 | 16 | -6 | 13 |
| 7 |  Sirens | 10 | 3 | 3 | 4 | 11 | 16 | -5 | 12 |
| 8 |  Fgura U. | 10 | 3 | 2 | 5 | 24 | 19 | 5 | 11 |
| 9 |  Kirkop U. | 10 | 3 | 2 | 5 | 17 | 14 | 3 | 11 |
| 10 |  Msida SJ | 9 | 1 | 2 | 6 | 5 | 21 | -16 | 5 |
| 11 |  St. George's | 9 | 0 | 2 | 7 | 4 | 40 | -36 | 2 |
| 12 | Marsa | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
